PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00086.100
Common NameJCGZ_06149, LOC105634865
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 203aa    MW: 22464.3 Da    PI: 9.3029
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00086.100genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-19555155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                    ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  + g
  Jcr4S00086.100  5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAILMSG 55
                    59*******9.**********8.....334*********************987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.46E-34565No hitNo description
SMARTSM003801.4E-40669IPR001471AP2/ERF domain
PROSITE profilePS5103221.957663IPR001471AP2/ERF domain
PfamPF008472.6E-12653IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-20664IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-33663IPR001471AP2/ERF domain
PRINTSPR003671.2E-10718IPR001471AP2/ERF domain
PRINTSPR003671.2E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVQSKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFETAE EAARAYDEAA ILMSGRNAKT  60
NFPVVTSNQE GISNDKSSLS SPLSTSALSS FLKAKLRKCC KSPPSLTCLR LDTENSHIGV  120
WQKRAGPRSD SNWVMIVDQL GKKDEEEAKP KLSSSETTEI LIGQEVGHVG GGNDGRGGSG  180
GRDSLDEEQR VALQMIEELL NRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A5e-17270170ATERF1
2gcc_A5e-17270170ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073196.11e-149PREDICTED: ethylene-responsive transcription factor WIN1
SwissprotQ9XI332e-76WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A067KQ091e-149A0A067KQ09_JATCU; Uncharacterized protein
STRINGGLYMA08G22590.13e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.11e-62ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]